Publications

2020

34. NB Rego, E Xi, AJ Patel. "Predicting Protein Interaction Interfaces Using Context-Dependent Hydrophobicity", in preparation (2020).

33. A Jayaraman, AJ Patel. " Molecular design and engineering of biomimetic, bioinspired and biologically derived materials ", Mol. Syst. Des. Eng., 2020, 5, 599-601. Editorial.

2019

32. H Jiang, AJ Patel. "Recent advances in estimating contact angles using molecular simulations and enhanced sampling methods", Current Opinion in Chemical Engineering, 23, 130-137 (2019).

31. Z Jiang, R Remsing, N Rego, AJ Patel. "Characterizing Solvent Density Fluctuations in Dynamical Observation Volumes", Journal of Physical Chemistry B, 123, 7, 1650-1661 (2019). arXiv

30. H Jiang, S Fialoke, Z Vicars, AJ Patel. "Characterizing Surface Wetting and Interfacial Properties using Enhanced Sampling (SWIPES)", Soft Matter, 15, 860-869 (2019). arXiv

29. N Rego, E Xi, AJ Patel. "Protein Hydration Waters are Susceptible to Unfavorable Perturbations", Journal of the American Chemical Society, 141, 2080-2086 (2019). arXiv

2018

28. S Marks and AJ Patel. "Antifreeze Protein Hydration Waters: Unstructured Unless Bound to Ice", Proceedings of the National Academy of Sciences, 115, 8244-8246 (2018).

27. E Xi, S Marks, S Fialoke, and AJ Patel Sparse Sampling of Water Density Fluctuations Near Liquid-Vapor Coexistence, Molecular Simulation, 44:13-14, 1124-1135 (2018).

26. R Remsing, E Xi, AJ Patel Protein Hydration Thermodynamics: The Influence of Flexibility and Salt on Hydrophobin II Hydration, Journal of Physical Chemistry B, 122, 3635-3646 (2018).

25. IH Moskowitz, WD Seider, AJ Patel, JE Arbogast, and UG Oktem, Understanding rare safety and reliability events using transition path sampling, Computers & Chemical Engineering, 108, 74-88 (2018).

2017

24. E Xi, V Venkateshwaran, L Li, N Rego, AJ Patel, and S Garde, Hydrophobicity of proteins and nanostructured solutes is governed by topographical and chemical context, Proceedings of the National Academy of Sciences, 114, 13345-13350 (2017).

2016

23. S Prakash, E Xi, and AJ Patel, "Spontaneous Recovery of Superhydrophobicity on Nanotextured Surfaces", Proceedings of the National Academy of Sciences, 113, 5508-5513 (2016).

22. E Xi and AJ Patel, "The Hydrophobic Effect and Fluctuations: The Long and the Short of it", Proceedings of the National Academy of Sciences, 113, 4549-4551 (2016).

21. E Xi, RC Remsing, and AJ Patel, "Sparse Sampling of Water Density Fluctuations in Interfacial Environments", Journal of Chemical Theory and Computation, 12, 706-713 (2016).

2015

20. RC Remsing, E Xi, S Vembanur, S Sharma, PG Debenedetti, S Garde, and AJ Patel, "Pathways to dewetting in hydrophobic confinement", Proceedings of the National Academy of Sciences, 112, 8181-8186 (2015).

19. RC Remsing and AJ Patel, "Water Density Fluctuations Relevant to Hydrophobic Hydration are Unaltered by Attractions", Journal of Chemical Physics, 142, 024502 (2015).

2014

18. AJ Patel and S Garde, "An Efficient Method to Characterize the Context-Dependent Hydrophobicity of Proteins", Journal of Physical Chemistry B, 118, 1564 (2014).

2013

17. S Vembanur, AJ Patel, S Sarupria, and S Garde, "On the Thermodynamics and Kinetics of Hydrophobic Interactions at Interfaces", Journal of Physical Chemistry B, 117, 10261 (2013).

2012

16. AJ Patel, P Varilly, SN Jamadagni, M Hagan, D Chandler, and S Garde, "Sitting at the Edge: How Biomolecules Use Hydrophobicity to Tune their Interactions and Function", Journal of Physical Chemistry B 116, 2498 (2012).

2011

15. B Rotenberg, AJ Patel, and D Chandler, "Molecular Explanation for Why Talc Surfaces can be Both Hydrophilic and Hydrophobic", Journal of the American Chemical Society, 133, 20521 (2011).

14. AJ Patel, P Varilly, SN Jamadagni, H Acharya, S Garde, and D Chandler, "Extended Surfaces Modulate Hydrophobic Interactions of Neighboring Solutes", Proceedings of the National Academy of Sciences, 108, 17678 (2011).

13. S Garde and AJ Patel, "Unraveling the Hydrophobic Effect, One Molecule at a Time", Proceedings of the National Academy of Sciences, 108, 16491 (2011).

12. AJ Patel, P Varilly, D Chandler, and S Garde, "Quantifying Density Fluctuations in Volumes of All Shapes and Sizes using Indirect Umbrella Sampling", Journal of Statistical Physics, 145, 265 (2011).

11. P Varilly, AJ Patel, and D Chandler, "An Improved Coarse-grained Model of Solvation and the Hydrophobic Effect", Journal of Chemical Physics, 134, 074109 (2011). Selected by the journal as a research highlight article for February 2011.

10. AJ Patel, TJ Rappl, and NP Balsara, "Similarities of the Signatures of the Initial Stages of Phase Separation in Metastable and Unstable Polymer Blends", Physical Review Letters, 106, 035702 (2011).

2010

9. AJ Patel, S Mochrie, S Narayanan, A Sandy, H Watanabe, and NP Balsara, "Dynamic Signatures of Microphase Separation in a Block Copolymer Melt Determined by X-ray Photon Correlation Spectroscopy and Rheology", Macromolecules 43, 1515 (2010).

8. AJ Patel, P Varilly, and D Chandler, "Fluctuations of Water Near Extended Hydrophobic and Hydrophilic Surfaces", Journal of Physical Chemistry B 114, 1632 (2010).

2007

7. M Singh, O Odusanya, GM Wilmes, HB Eitouni, ED Gomez, AJ Patel, VL Chen, MJ Park, P Fragouli, H Iatrou, N Hadjichristidis, D Cookson, and NP Balsara, "Effect of Molecular Weight on the Mechanical and Electrical Properties of Block Copolymer Electrolytes", Macromolecules 40, 4578 (2007).

6. AJ Patel and NP Balsara,"Observing Nucleation Close to the Binodal by Perturbing Metastable Polymer Blends", Macromolecules 40, 1675 (2007).

2006

5. ML Ruegg, AJ Patel, S Narayanan, A Sandy, SGJ Mochrie, H Watanabe, and NP Balsara, "Condensed Exponential Correlation Functions in Multicomponent Polymer Blends Measured by X-ray Photon Correlation Spectroscopy", Macromolecules 39, 8822 (2006).

4. AJ Patel, S Narayanan, A Sandy, SGJ Mochrie, BA Garetz, H Watanabe, and NP Balsara, "Relationship between Structural and Stress Relaxation in a Block-Copolymer Melt", Physical Review Letters 96, 257801 (2006).

3. FM Abuzaina, BA Garetz, AJ Patel, MC Newstein, SP Gido, XC Hu, and NP Balsara, "Observation of Nematic Texture in a Diblock Copolymer Melt", Macromolecules 39, 3377 (2006).

2005

2. BA Garetz, MC Newstein, JD Wilbur, AJ Patel, DA Durkee, RA Segalman, JA Liddle, and NP Balsara, "Grain Structure in Block Copolymer Thin Films Studied by Guided Wave Depolarized Light Scattering", Macromolecules 38, 4282 (2005).

1. FM Abuzaina, AJ Patel, S Mochrie, S Narayanan, A Sandy, BA Garetz, and NP Balsara, "Structure and Phase Behavior of Block Copolymer Melts Near the Sphere-Cylinder Boundary", Macromolecules 38, 7090 (2005).