Submitted Manuscripts


M NB Rego, E Xi, and AJ Patel. "Identifying Hydrophobic Protein Patches to Inform Protein Interaction Interfaces", manuscript submitted for publication.


Journal Articles


2020


33 A Jayaraman and AJ Patel. "Molecular Design and Engineering of Biomimetic, Bioinspired and Biologically Derived Materials", Mol. Syst. Des. Eng., 2020, 5, 599-601. Editorial


Paper

@article{jayaraman2020molecular,
  title={Molecular design and engineering of biomimetic, bioinspired and biologically derived materials},
  author={Jayaraman, Arthi and Patel, Amish J},
  journal={Molecular Systems Design \& Engineering},
  volume={5},
  number={3},
  pages={599--601},
  year={2020},
  publisher={Royal Society of Chemistry}
}

2019


32 H Jiang and AJ Patel. "Recent Advances in Estimating Contact Angles using Molecular Simulations and Enhanced Sampling Methods", Current Opinion in Chemical Engineering, 23, 130-137 (2019).


Paper

@article{jiang2019recent,
  title={Recent advances in estimating contact angles using molecular simulations and enhanced sampling methods},
  author={Jiang, Hao and Patel, Amish J},
  journal={Current Opinion in Chemical Engineering},
  volume={23},
  pages={130--137},
  year={2019},
  publisher={Elsevier}
}

31 Z Jiang, R Remsing, N Rego, and AJ Patel. "Characterizing Solvent Density Fluctuations in Dynamical Observation Volumes", Journal of Physical Chemistry B, 123, 7, 1650-1661 (2019).


Paper arXiv Preprint

@article{jiang2019characterizing,
  title={Characterizing solvent density fluctuations in dynamical observation volumes},
  author={Jiang, Zhitong and Remsing, Richard C and Rego, Nicholas B and Patel, Amish J},
  journal={The Journal of Physical Chemistry B},
  volume={123},
  number={7},
  pages={1650--1661},
  year={2019},
  publisher={ACS Publications}
}

30 H Jiang, S Fialoke, Z Vicars, and AJ Patel. "Characterizing Surface Wetting and Interfacial Properties using Enhanced Sampling (SWIPES)", Soft Matter, 15, 860-869 (2019).


Paper arXiv Preprint

@article{jiang2019swipes,
  title={Characterizing surface wetting and interfacial properties using enhanced sampling (SWIPES)},
  author={Jiang, Hao and Fialoke, Suruchi and Vicars, Zachariah and Patel, Amish J},
  journal={Soft matter},
  volume={15},
  number={5},
  pages={860--869},
  year={2019},
  publisher={Royal Society of Chemistry}
}

29 N Rego, E Xi, and AJ Patel. "Protein Hydration Waters are Susceptible to Unfavorable Perturbations", Journal of the American Chemical Society, 141, 2080-2086 (2019).


Paper arXiv Preprint


                                    

2018


28 S Marks and AJ Patel. "Antifreeze Protein Hydration Waters: Unstructured Unless Bound to Ice", Proceedings of the National Academy of Sciences, 115, 8244-8246 (2018).


Paper


                                    

27 E Xi, S Marks, S Fialoke, and AJ Patel. Sparse Sampling of Water Density Fluctuations Near Liquid-Vapor Coexistence, Molecular Simulation, 44:13-14, 1124-1135 (2018).


Paper


                                    

26 R Remsing, E Xi, and AJ Patel. "Protein Hydration Thermodynamics: The Influence of Flexibility and Salt on Hydrophobin II Hydration", Journal of Physical Chemistry B, 122, 3635-3646 (2018).


Paper


                                    

25 IH Moskowitz, WD Seider, AJ Patel, JE Arbogast, and UG Oktem, "Understanding rare safety and reliability events using transition path sampling", Computers & Chemical Engineering, 108, 74-88 (2018).


Paper


                                    

2017


24 E Xi, V Venkateshwaran, L Li, N Rego, AJ Patel, and S Garde, "Hydrophobicity of proteins and nanostructured solutes is governed by topographical and chemical context", Proceedings of the National Academy of Sciences, 114, 13345-13350 (2017).


Paper


                                    

2016


23 S Prakash, E Xi, and AJ Patel, "Spontaneous Recovery of Superhydrophobicity on Nanotextured Surfaces", Proceedings of the National Academy of Sciences, 113, 5508-5513 (2016).


Paper


                                    

22 E Xi and AJ Patel, "The Hydrophobic Effect and Fluctuations: The Long and the Short of it", Proceedings of the National Academy of Sciences, 113, 4549-4551 (2016).


Paper


                                    

21 E Xi, RC Remsing, and AJ Patel, "Sparse Sampling of Water Density Fluctuations in Interfacial Environments", Journal of Chemical Theory and Computation, 12, 706-713 (2016).


Paper


                                    

2015


20 RC Remsing, E Xi, S Vembanur, S Sharma, PG Debenedetti, S Garde, and AJ Patel, "Pathways to dewetting in hydrophobic confinement", Proceedings of the National Academy of Sciences, 112, 8181-8186 (2015).


Paper


                                    

19 RC Remsing and AJ Patel, "Water Density Fluctuations Relevant to Hydrophobic Hydration are Unaltered by Attractions", Journal of Chemical Physics, 142, 024502 (2015).


Paper


                                    

2014


18 AJ Patel and S Garde, "An Efficient Method to Characterize the Context-Dependent Hydrophobicity of Proteins", Journal of Physical Chemistry B, 118, 1564 (2014).


Paper


                                    

2013


17 S Vembanur, AJ Patel, S Sarupria, and S Garde, "On the Thermodynamics and Kinetics of Hydrophobic Interactions at Interfaces", Journal of Physical Chemistry B, 117, 10261 (2013).


Paper


                                    

2012


16 AJ Patel, P Varilly, SN Jamadagni, M Hagan, D Chandler, and S Garde, "Sitting at the Edge: How Biomolecules Use Hydrophobicity to Tune their Interactions and Function", Journal of Physical Chemistry B 116, 2498 (2012).


Paper


                                    

2011


15 B Rotenberg, AJ Patel, and D Chandler, "Molecular Explanation for Why Talc Surfaces can be Both Hydrophilic and Hydrophobic", Journal of the American Chemical Society, 133, 20521 (2011).


Paper


                                    

14 AJ Patel, P Varilly, SN Jamadagni, H Acharya, S Garde, and D Chandler, "Extended Surfaces Modulate Hydrophobic Interactions of Neighboring Solutes", Proceedings of the National Academy of Sciences, 108, 17678 (2011).


Paper


                                    

13 S Garde and AJ Patel, "Unraveling the Hydrophobic Effect, One Molecule at a Time", Proceedings of the National Academy of Sciences, 108, 16491 (2011).


Paper


                                    

12 AJ Patel, P Varilly, D Chandler, and S Garde, "Quantifying Density Fluctuations in Volumes of All Shapes and Sizes using Indirect Umbrella Sampling", Journal of Statistical Physics, 145, 265 (2011).


Paper


                                    

11 P Varilly, AJ Patel, and D Chandler, "An Improved Coarse-grained Model of Solvation and the Hydrophobic Effect", Journal of Chemical Physics, 134, 074109 (2011). Selected by the journal as a research highlight article for February 2011.


Paper


                                    

10 AJ Patel, TJ Rappl, and NP Balsara, "Similarities of the Signatures of the Initial Stages of Phase Separation in Metastable and Unstable Polymer Blends", Physical Review Letters, 106, 035702 (2011).


Paper


                                    

2010


9 AJ Patel, S Mochrie, S Narayanan, A Sandy, H Watanabe, and NP Balsara, "Dynamic Signatures of Microphase Separation in a Block Copolymer Melt Determined by X-ray Photon Correlation Spectroscopy and Rheology", Macromolecules 43, 1515 (2010).


Paper


                                    

8 AJ Patel, P Varilly, and D Chandler, "Fluctuations of Water Near Extended Hydrophobic and Hydrophilic Surfaces", Journal of Physical Chemistry B 114, 1632 (2010).


Paper


                                    

2007


7 M Singh, O Odusanya, GM Wilmes, HB Eitouni, ED Gomez, AJ Patel, VL Chen, MJ Park, P Fragouli, H Iatrou, N Hadjichristidis, D Cookson, and NP Balsara, "Effect of Molecular Weight on the Mechanical and Electrical Properties of Block Copolymer Electrolytes", Macromolecules 40, 4578 (2007).


Paper


                                    

6 AJ Patel and NP Balsara, "Observing Nucleation Close to the Binodal by Perturbing Metastable Polymer Blends", Macromolecules 40, 1675 (2007).


Paper


                                    

2006


5 ML Ruegg, AJ Patel, S Narayanan, A Sandy, SGJ Mochrie, H Watanabe, and NP Balsara, "Condensed Exponential Correlation Functions in Multicomponent Polymer Blends Measured by X-ray Photon Correlation Spectroscopy", Macromolecules 39, 8822 (2006).


Paper


                                    

4 AJ Patel, S Narayanan, A Sandy, SGJ Mochrie, BA Garetz, H Watanabe, and NP Balsara, "Relationship between Structural and Stress Relaxation in a Block-Copolymer Melt", Physical Review Letters 96, 257801 (2006).


Paper


                                    

3 FM Abuzaina, BA Garetz, AJ Patel, MC Newstein, SP Gido, XC Hu, and NP Balsara, "Observation of Nematic Texture in a Diblock Copolymer Melt", Macromolecules 39, 3377 (2006).


Paper


                                    

2005


2 BA Garetz, MC Newstein, JD Wilbur, AJ Patel, DA Durkee, RA Segalman, JA Liddle, and NP Balsara, "Grain Structure in Block Copolymer Thin Films Studied by Guided Wave Depolarized Light Scattering", Macromolecules 38, 4282 (2005).


Paper


                                    

1 FM Abuzaina, AJ Patel, S Mochrie, S Narayanan, A Sandy, BA Garetz, and NP Balsara, "Structure and Phase Behavior of Block Copolymer Melts Near the Sphere-Cylinder Boundary", Macromolecules 38, 7090 (2005).


Paper